Basic Information
Locus ID:
BniB02g072510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 62978481 | 62980086 | + | BniB02g072510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 33,009.75 Da | 44.49 | 74.28 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 69 | 1.3E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 81 | 1.49E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 75 | 3.5E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 6 | 75 | 2.9E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 5 | 79 | 10.564854 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 306 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_013593671.1 | PREDICTED: binding partner of ACD11 1 [Brassica oleracea var. oleracea] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9MQ65 | RRM domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00056898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology