Basic Information
Locus ID:
BniB02g071030.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 62149118 | 62152494 | - | BniB02g071030.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 109,581.19 Da | 36.71 | 104.74 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 467 | 489 | 1.5 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 712 | 981 | 6.0E-46 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 72 | 2.8E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 296 | 316 | 0.14 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 248 | 270 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 704 | 983 | 4.65E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 367 | 626 | 5.67E-53 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 452 | 1.26E-64 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 788 | 991 | 5.8E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 143 | 232 | 1.5E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 233 | 337 | 3.1E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 340 | 634 | 4.3E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 142 | 2.4E-25 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 681 | 787 | 1.2E-23 | - |
| SMART | SM00369 | LRR_typ_2 | 489 | 513 | 31.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 537 | 566 | 100.0 | - |
| SMART | SM00369 | LRR_typ_2 | 270 | 293 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 173 | 196 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 561 | 585 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 124 | 148 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 465 | 488 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 294 | 318 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 342 | 366 | 78.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 246 | 269 | 380.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 465 | 491 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 270 | 293 | 380.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 149 | 181 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 294 | 315 | 200.0 | - |
| SMART | SM00220 | serkin_6 | 710 | 992 | 1.2E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 710 | 992 | 37.134979 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 539 | 561 | 7.026593 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 832 | 844 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 465 | 478 | 9.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 369 | 382 | 9.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_018484533.1 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Raphanus sativus] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8X7Q4M9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068118 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology