Basic Information
Locus ID:
BniB02g070950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 62104239 | 62105864 | + | BniB02g070950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 58,715.84 Da | 49.96 | 94.39 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 282 | 399 | 6.2E-10 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 128 | 184 | 3.1E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 206 | 6.32E-13 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 250 | 507 | 1.23E-22 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 412 | 509 | 2.3E-8 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 243 | 344 | 9.4E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 213 | 9.6E-14 | IPR032675 |
| SMART | SM00219 | tyrkin_6 | 274 | 482 | 0.0065 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 268 | 517 | 10.478254 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 173 | 193 | 7.288416 | IPR001611 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20790.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009137151.1 | putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Brassica rapa] | 0 |
| Q9M9E0 | L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana OX=3702 GN=LECRKS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P1W3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_095430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20839 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30077740 |
| Apiaceae | Apium graveolens | 1 | Ag7G01839 |
| Arecaceae | Cocos nucifera | 1 | scaffold007984G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719634 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027352m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g070950.2N, BniB03g061230.2N, BniB05g016160.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0706 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG12.1104, evm.TU.LG12.1107 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00038579, Pov_00038580 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1024 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16864 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5711 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17313 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.152 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8606 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23018 |
| Salicaceae | Populus euphratica | 1 | populus_peu17179 |