halophFGD

Basic Information

Locus ID: BniB02g070690.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Diacylglycerol kinase catalytic domain (presumed)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B2	61992914	61998746	+	BniB02g070690.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.59	135,939.25 Da	43.75	82.08	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02184	HAT (Half-A-TPR) repeat	679	708	6.0E-11	IPR003107
Pfam	PF00781	Diacylglycerol kinase catalytic domain	121	255	5.8E-31	IPR001206
SUPERFAMILY	SSF48452	TPR-like	554	665	7.15E-24	IPR011990
SUPERFAMILY	SSF48452	TPR-like	666	735	1.19E-12	IPR011990
SUPERFAMILY	SSF111331	NAD kinase/diacylglycerol kinase-like	118	465	1.07E-59	IPR016064
SUPERFAMILY	SSF48452	TPR-like	1002	1106	8.22E-10	IPR011990
SUPERFAMILY	SSF48452	TPR-like	736	999	9.01E-39	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	999	1107	6.5E-10	IPR011990
Gene3D	G3DSA:2.60.200.40	-	252	465	7.4E-56	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	511	795	1.1E-39	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	796	998	7.3E-42	IPR011990
Gene3D	G3DSA:3.40.50.10330	-	103	250	7.5E-41	IPR017438
SMART	SM00386	hat_new_1	712	747	0.19	IPR003107
SMART	SM00046	dagk_c4a_7	121	253	2.4E-8	IPR001206
SMART	SM00386	hat_new_1	544	576	34.0	IPR003107
SMART	SM00386	hat_new_1	830	864	1.7E-6	IPR003107
SMART	SM00386	hat_new_1	749	783	0.0052	IPR003107
SMART	SM00386	hat_new_1	679	710	4.8E-5	IPR003107
SMART	SM00386	hat_new_1	979	1013	0.0012	IPR003107
SMART	SM00386	hat_new_1	874	910	8.0E-5	IPR003107
SMART	SM00386	hat_new_1	945	977	1.9E-4	IPR003107
SMART	SM00386	hat_new_1	612	644	2.8E-4	IPR003107
SMART	SM00386	hat_new_1	578	610	1.2E-5	IPR003107
SMART	SM00386	hat_new_1	646	677	0.0037	IPR003107
SMART	SM00386	hat_new_1	793	825	140.0	IPR003107
SMART	SM00386	hat_new_1	912	943	38.0	IPR003107
SMART	SM00386	hat_new_1	1015	1046	0.016	IPR003107
ProSiteProfiles	PS50146	DAG-kinase catalytic (DAGKc) domain profile.	117	259	38.508755	IPR001206
Coils	Coil	Coil	1010	1030	-	-

Gene Ontology

Biological Process:

GO:0006396 (RNA processing)

Molecular Function:

GO:0003951 (NAD+ kinase activity) GO:0005515 (protein binding) GO:0016301 (kinase activity)

KEGG Pathway

KO Term:

K04718 (sphingosine kinase [EC:2.7.1.91])

Pathway:

ko00600 (Sphingolipid metabolism) map00600 (Sphingolipid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko04020 (Calcium signaling pathway) map04020 (Calcium signaling pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04072 (Phospholipase D signaling pathway) map04072 (Phospholipase D signaling pathway) ko04370 (VEGF signaling pathway) map04370 (VEGF signaling pathway) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04666 (Fc gamma R-mediated phagocytosis)

Module:

M00100 (Sphingosine degradation)

Reaction:

R01926 (Sphingosine + ATP <=> Sphingosine 1-phosphate + ADP) R02976 (ATP + Sphinganine <=> ADP + Sphinganine 1-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G21540.1	sphingosine kinase 1. Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.
RefSeq	XP_009137195.2	sphingosine kinase 1 isoform X1 [Brassica rapa]
Swiss-Prot	Q8L7L1	Sphingosine kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SPHK1 PE=1 SV=1
TrEMBL	A0A8X7NX87	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_090601 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg7680
Aizoaceae	Mesembryanthemum crystallinum	1	gene_1778
Amaranthaceae	Atriplex hortensis	2	Ah004491, Ah014257
Amaranthaceae	Beta vulgaris	2	BVRB_2g025720, BVRB_5g099320
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg20652, Sbi_jg20653, Sbi_jg20654, Sbi_jg23103 ... Sbi_jg23109
Amaranthaceae	Salicornia europaea	2	Seu_jg16967, Seu_jg16968
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009220, GOSA_00009221
Amaranthaceae	Suaeda glauca	4	Sgl51884, Sgl57179, Sgl63416, Sgl67896
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000009166, gene:ENSEOMG00000010973 ... gene:ENSEOMG00000025709, gene:ENSEOMG00000027395, gene:ENSEOMG00000035684, gene:ENSEOMG00000046084
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.5BG0006500, CQ.Regalona.r1.8AG0022770 ... CQ.Regalona.r1.8BG0019670
Anacardiaceae	Pistacia vera	2	pistato.v30150190, pistato.v30186820
Apiaceae	Apium graveolens	4	Ag1G01104, Ag8G00598, Ag9G02006, Ag9G02007
Arecaceae	Cocos nucifera	1	COCNU_02G003250
Arecaceae	Phoenix dactylifera	1	gene-LOC103708791
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.1129.V1.1, AsparagusV1_01.2642.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G22652, Ftri16G19065
Brassicaceae	Arabidopsis thaliana	4	AT3G13210.1, AT3G51110.1, AT5G41770.1, AT5G45990.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10024572m.g.v1.0, Thhalv10027428m.g.v1.0 ... Thhalv10027664m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp2g12900.v2.2, Sp5g11100.v2.2, Sp6g03340.v2.2 ... Sp7g00320.v2.2, Sp7g19710.v2.2
Brassicaceae	Brassica nigra	4	BniB01g024450.2N, BniB02g070690.2N, BniB04g043860.2N ... BniB06g059120.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G0036, Ceq09G1968
Casuarinaceae	Casuarina glauca	4	Cgl03G0045, Cgl03G0221, Cgl03G0244, Cgl09G2148
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g12710
Dunaliellaceae	Dunaliella salina	1	Dusal.0283s00017.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24710
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.2213, evm.TU.LG10.518
Plantaginaceae	Plantago ovata	5	Pov_00011747, Pov_00017025, Pov_00017071, Pov_00017072 ... Pov_00021325
Plumbaginaceae	Limonium bicolor	4	Lb1G05694, Lb2G09230, Lb2G09231, Lb6G31245
Poaceae	Echinochloa crus-galli	6	AH05.2433, AH06.1803, BH05.2529, BH06.1671, CH05.2627 ... CH06.1868
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0228580, gene-QOZ80_3BG0274830 ... gene-QOZ80_6AG0530160, gene-QOZ80_6BG0484070
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0492710.1, HORVU.MOREX.r3.7HG0719340.1
Poaceae	Lolium multiflorum	3	gene-QYE76_016627, gene-QYE76_034296, gene-QYE76_053720
Poaceae	Oryza coarctata	5	Oco07G006390, Oco15G005570, Oco19G002250, Oco20G002350 ... Oco20G002360
Poaceae	Oryza sativa	3	LOC_Os05g22260.1, LOC_Os06g33250.1, LOC_Os10g18150.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G229600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0400226, Pt_Chr0400238
Poaceae	Sporobolus alterniflorus	4	Chr01G023830, Chr04G013590, Chr07G013010, Chr07G013020
Poaceae	Thinopyrum elongatum	1	Tel7E01G636100
Poaceae	Triticum dicoccoides	3	gene_TRIDC5BG045710, gene_TRIDC7AG049060 ... gene_TRIDC7BG044810
Poaceae	Triticum aestivum	5	TraesCS5B02G277100.1, TraesCS5D02G284700.1 ... TraesCS7A02G351600.1, TraesCS7B02G276500.1, TraesCS7D02G371400.1
Poaceae	Zea mays	2	Zm00001eb051990_P001, Zm00001eb217360_P001
Poaceae	Zoysia japonica	2	nbis-gene-12195, nbis-gene-47219
Poaceae	Zoysia macrostachya	2	Zma_g3475, Zma_g993
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.3290, evm.TU.LG16.310
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g13960
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_16_RagTag.104
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-22349, nbisL1-mrna-9386
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-4388
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20378
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000022l.430
Rhizophoraceae	Kandelia obovata	1	Maker00014416
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3571
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-6741
Salicaceae	Populus euphratica	6	populus_peu03655, populus_peu03656, populus_peu03657 ... populus_peu34504, populus_peu34505, populus_peu38019
Solanaceae	Lycium barbarum	2	gene-LOC132603813, gene-LOC132606039
Solanaceae	Solanum chilense	1	SOLCI003387600
Solanaceae	Solanum pennellii	5	gene-LOC107007401, gene-LOC107012936, gene-LOC107013046 ... gene-LOC107013047, gene-LOC107031823
Tamaricaceae	Reaumuria soongarica	1	STRG.23357_chr05_-
Tamaricaceae	Tamarix chinensis	1	TC02G0610
Zosteraceae	Zostera marina	1	Zosma05g16320.v3.1