Basic Information
Locus ID:
BniB02g070650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 61966034 | 61971098 | - | BniB02g070650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 106,626.28 Da | 67.04 | 73.69 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 209 | 369 | 1.43345E-22 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 847 | 910 | 1.4E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 264 | 376 | 2.5E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 846 | 920 | 1.51E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 715 | 779 | 1.41E-8 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 147 | 396 | 5.93E-20 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 843 | 926 | 2.8E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 145 | 420 | 1.1E-24 | IPR023214 |
| SMART | SM00577 | forpap2 | 207 | 383 | 8.9E-22 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 716 | 780 | 5.9E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 846 | 914 | 5.6E-7 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 148 | 398 | 17.671276 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 715 | 781 | 9.999001 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 845 | 915 | 11.868275 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 913 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 601 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_013717245.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Brassica napus] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7U1M1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology