Basic Information
Locus ID:
BniB02g067710.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 60544484 | 60546532 | - | BniB02g067710.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 77,081.27 Da | 38.54 | 78.02 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 133 | 174 | 9.6E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 187 | 234 | 9.9E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 494 | 539 | 2.5E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 72 | 120 | 1.1E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 301 | 348 | 7.6E-7 | IPR004146 |
| Pfam | PF03107 | C1 domain | 384 | 431 | 1.3E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 551 | 597 | 1.1E-9 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 516 | 606 | 8.89E-22 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 326 | 442 | 2.79E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 158 | 236 | 1.53E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 42 | 120 | 8.37E-15 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 239 | 304 | 4.6E-12 | - |
| SMART | SM00249 | PHD_3 | 23 | 82 | 25.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 93 | 167 | 1.2 | IPR001965 |
| SMART | SM00249 | PHD_3 | 406 | 463 | 7.7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 263 | 323 | 6.5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 512 | 573 | 6.4 | IPR001965 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 136 | 187 | 8.3979 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 9 | 59 | 8.718 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27473.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_024006869.1 | uncharacterized protein LOC18012767 [Eutrema salsugineum] | 0 |
| Q6NQN8 | Protein VACUOLELESS GAMETOPHYTES OS=Arabidopsis thaliana OX=3702 GN=VLG PE=1 SV=1 | 0 | |
| TrEMBL | V4K596 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10003760mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |