Basic Information
Locus ID:
BniB02g066980.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycosyl hydrolase family 38 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 60225695 | 60231890 | + | BniB02g066980.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 115,194.67 Da | 38.82 | 82.93 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 317 | 0.0 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 898 | 1003 | 7.7E-13 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 816 | 4.2E-50 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 353 | 1.2E-97 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 7.9E-20 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 1006 | 1.88E-142 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 450 | 1.11E-26 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 356 | 1.33E-112 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 598 | 864 | 1.1E-95 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 882 | 1009 | 2.9E-36 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 1.4E-32 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 321 | 3.6E-123 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 479 | 596 | 1.0E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 457 | 5.0E-19 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 1.8E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_009152026.1 | alpha-mannosidase At3g26720 [Brassica rapa] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | A0A397ZA60 | Alpha-mannosidase OS=Brassica campestris OX=3711 GN=BRAA06T27098Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology