Basic Information
Locus ID:
BniB02g066270.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 59793729 | 59794217 | + | BniB02g066270.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 17,562.74 Da | 25.55 | 94.01 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 87 | 149 | 3.34638E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 11 | 72 | 1.4E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 86 | 148 | 2.2E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 149 | 6.73E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 4 | 155 | 1.1E-41 | - |
| SMART | SM00054 | efh_1 | 48 | 76 | 6.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 12 | 40 | 0.003 | IPR002048 |
| SMART | SM00054 | efh_1 | 87 | 115 | 0.005 | IPR002048 |
| SMART | SM00054 | efh_1 | 123 | 151 | 6.5E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 83 | 118 | 13.843916 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 8 | 43 | 14.06708 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 154 | 12.309669 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 96 | 108 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 21 | 33 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_009152128.1 | probable calcium-binding protein CML16 [Brassica rapa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7Q5P2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068598 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology