Basic Information
Locus ID:
BniB02g065670.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the GDA1 CD39 NTPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 59489912 | 59492313 | - | BniB02g065670.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 60,969.34 Da | 34.72 | 82.04 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00012 | NBD_sugar-kinase_HSP70_actin | 87 | 248 | 1.22535E-5 | - |
| Pfam | PF01150 | GDA1/CD39 (nucleoside phosphatase) family | 83 | 490 | 4.2E-78 | IPR000407 |
| Gene3D | G3DSA:3.30.420.150 | Exopolyphosphatase. Domain 2 | 206 | 469 | 8.3E-101 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 84 | 482 | 8.3E-101 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Reaction:
R00086 (ATP + H2O <=> ADP + Orthophosphate)
R00122 (ADP + H2O <=> AMP + Orthophosphate)
R00155 (UDP + H2O <=> UMP + Orthophosphate)
R00159 (UTP + H2O <=> UDP + Orthophosphate)
R00328 (GDP + H2O <=> GMP + Orthophosphate)
R00335 (GTP + H2O <=> GDP + Orthophosphate)
R00514 (CDP + H2O <=> CMP + Orthophosphate)
R00569 (CTP + H2O <=> CDP + Orthophosphate)
R00719 (ITP + H2O <=> IDP + Orthophosphate)
R00961 (IDP + H2O <=> IMP + Orthophosphate)
R02092 (dTDP + H2O <=> dTMP + Orthophosphate)
R02095 (dTTP + H2O <=> dTDP + Orthophosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02970.1 | GDA1/CD39 nucleoside phosphatase family protein. | 0 |
| RefSeq | XP_009152223.1 | probable apyrase 6 isoform X2 [Brassica rapa] | 0 |
| O80612 | Probable apyrase 6 OS=Arabidopsis thaliana OX=3702 GN=APY6 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7Q2B1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34768, jg9339 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3784 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014125 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153890 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42508, Sbi_jg45140 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27032 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002764 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35597, Sgl35681, Sgl40933 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000992, gene:ENSEOMG00000012520 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0001080, CQ.Regalona.r1.6BG0001090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30027360 |
| Apiaceae | Apium graveolens | 1 | Ag6G00392 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007580, COCNU_03G005800, COCNU_13G002460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716401, gene-LOC103718805 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.35.V1.1, AsparagusV1_07.3531.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G24261, Ftri5G20909 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G14230.1, AT1G14240.1, AT1G14250.1, AT2G02970.1 |
| Brassicaceae | Eutrema salsugineum | 6 | Thhalv10003943m.g.v1.0, Thhalv10007159m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g12580.v2.2, Sp1g12590.v2.2, Sp1g12600.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g037420.2N, BniB02g009330.2N, BniB02g065670.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0103 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0254s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.253 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027150, Pov_00029062 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01631 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3463, BH01.3826, BH08.1704, CH08.1851 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0250120, gene-QOZ80_3BG0277990 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0049370.1, HORVU.MOREX.r3.6HG0556250.2 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031413, gene-QYE76_048198 |
| Poaceae | Oryza coarctata | 4 | Oco05G014690, Oco06G015050, Oco15G009160, Oco16G008590 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g26080.1, LOC_Os08g33850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G339400, gene-BS78_07G146500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102865, Pt_Chr0405391 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G035640, Chr04G012370, Chr04G012380, Chr07G011800 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G238200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC6AG013710, gene_TRIDC6BG019260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6A02G105900.1, TraesCS6B02G135200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb018380_P002, Zm00001eb041370_P003 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1432 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1118, Zma_g24114 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.241, evm.TU.LG12.1462, evm.TU.LG13.392 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.623 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4846 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15750 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.321 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002455 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11342 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17871 |
| Salicaceae | Populus euphratica | 2 | populus_peu06719, populus_peu20616 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642079 |
| Solanaceae | Solanum chilense | 1 | SOLCI002164300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020755 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29341_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0581 |
| Zosteraceae | Zostera marina | 1 | Zosma06g17170.v3.1 |