Basic Information
Locus ID:
BniB02g065130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 59089346 | 59110232 | - | BniB02g065130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 205,259.77 Da | 33.84 | 96.60 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1515 | 1793 | 2.9208E-90 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 58 | 0.68 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 326 | 361 | 4.9E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 516 | 551 | 0.046 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 965 | 1000 | 0.0082 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 1510 | 1788 | 1.9E-48 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1266 | 1301 | 0.0092 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 1305 | 1364 | 4.1E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 819 | 854 | 4.0E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 363 | 423 | 1.3E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 856 | 916 | 2.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 541 | 941 | 6.63E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 838 | 1371 | 4.93E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 299 | 1.12E-41 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 325 | 491 | 1.02E-21 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1498 | 1807 | 2.0E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1588 | 1806 | 1.1E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 321 | 5.7E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 817 | 937 | 4.9E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 324 | 448 | 1.2E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 515 | 814 | 3.5E-76 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 963 | 1261 | 7.1E-79 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1472 | 1587 | 8.9E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1264 | 1389 | 1.7E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 625 | 650 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 386 | 410 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 771 | 793 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 879 | 903 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 183 | 207 | 22.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1073 | 1098 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 131 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 600 | 624 | 25.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1509 | 1795 | 1.4E-45 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 1049 | 1072 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 231 | 255 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 724 | 748 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 278 | 300 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1194 | 1217 | 210.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 724 | 749 | 670.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 231 | 256 | 670.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1327 | 1348 | 230.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 84 | 106 | 120.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 410 | 436 | 410.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 577 | 599 | 220.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1026 | 1048 | 280.0 | - |
| SMART | SM00369 | LRR_typ_2 | 676 | 700 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1327 | 1351 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1124 | 1148 | 280.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 386 | 407 | 280.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1351 | 1370 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 879 | 900 | 280.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1028 | 1050 | 7.403927 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1509 | 1793 | 40.018314 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1635 | 1647 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1515 | 1537 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1824 | 1878 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1824 | 1870 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013705669.2 | receptor-like kinase TMK3 [Brassica napus] | 0 |
| Q9SIT1 | Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Q1B9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068744 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology