Basic Information
Locus ID:
BniB02g065090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 59068182 | 59077137 | - | BniB02g065090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 151,924.50 Da | 34.51 | 94.72 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1050 | 1328 | 1.65267E-93 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 326 | 361 | 2.7E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 58 | 0.26 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 1045 | 1323 | 1.4E-48 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 814 | 873 | 5.5E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 363 | 423 | 1.1E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 776 | 811 | 1.7E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 476 | 511 | 0.011 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1032 | 1346 | 2.66E-80 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 369 | 874 | 1.96E-48 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 299 | 8.05E-42 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 321 | 1.6E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 774 | 898 | 2.5E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 324 | 448 | 7.6E-35 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1007 | 1122 | 3.2E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1123 | 1341 | 6.3E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 771 | 1.5E-81 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 635 | 659 | 56.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1044 | 1330 | 3.2E-45 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 704 | 727 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 183 | 207 | 85.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 836 | 859 | 93.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 386 | 410 | 33.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 860 | 882 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 231 | 255 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 583 | 0.22 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 131 | 12.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1044 | 1328 | 40.343395 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 838 | 861 | 7.296117 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1170 | 1182 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1050 | 1072 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 911 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1360 | 1405 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_013597833.1 | PREDICTED: receptor-like kinase TMK3 [Brassica oleracea var. oleracea] | 0 |
| Q9SIT1 | Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3DA70 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106305948 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology