Basic Information
Locus ID:
BniB02g064740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 58863609 | 58866686 | - | BniB02g064740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 41,689.11 Da | 33.50 | 95.12 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 166 | 0.19 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 51 | 335 | 8.63E-30 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 348 | 9.0E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 0.081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 208 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 129 | 167 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 299 | 29.0 | IPR001680 |
| Coils | Coil | Coil | 129 | 149 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013595961.1 | PREDICTED: SEC12-like protein 2 [Brassica oleracea var. oleracea] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A8X7Q1E3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068774 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology