Basic Information
Locus ID:
BniB02g064330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
FPS1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 58703353 | 58705553 | + | BniB02g064330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 44,599.94 Da | 38.37 | 98.68 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 79 | 322 | 3.85767E-80 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 79 | 341 | 2.0E-88 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 49 | 386 | 2.16E-90 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 39 | 386 | 3.1E-132 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 269 | 281 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 135 | 149 | - | IPR033749 |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 55 | 385 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 55 | 385 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47770.1 | farnesyl diphosphate synthase 1. Encodes a protein with farnesyl diphosphate synthase activity. | 0 |
| RefSeq | XP_048637318.1 | farnesyl pyrophosphate synthase 2-like [Brassica napus] | 0 |
| Q09152 | Farnesyl pyrophosphate synthase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FPS1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A816T1Z9 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_A06P44790.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg21765, jg24630 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12122, gene_3 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah009100, Ah017240, Ah017906, Ah017907 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g090750, BVRB_8g184270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18552, Sbi_jg36957 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4823 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017305 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23593, Sgl28793, Sgl28801, Sgl46569 |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000010089, gene:ENSEOMG00000010644 ... |
| Amaranthaceae | Chenopodium quinoa | 8 | CQ.Regalona.r1.2AG0007380, CQ.Regalona.r1.2BG0000590 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151850, pistato.v30152140 |
| Apiaceae | Apium graveolens | 1 | Ag2G01718 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G008660, COCNU_14G005730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708154, gene-LOC103709296 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1354.V1.1, AsparagusV1_02.1627.V1.1 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri15G04615, Ftri15G21532, Ftri15G27378, Ftri16G07414 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G17190.1, AT5G47770.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000912m.g.v1.0, Thhalv10025643m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12470.v2.2, Sp7g17010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064330.2N, BniB04g010020.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1516, Ceq02G1421 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1678, Cgl02G1466 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1212s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g00260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9021 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2072, evm.TU.LG12.1291 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039157 |
| Plumbaginaceae | Limonium bicolor | 16 | Lb0G37119, Lb0G37120, Lb1G01399, Lb2G14145, Lb3G15725 ... |
| Poaceae | Echinochloa crus-galli | 13 | AH02.2849, AH02.2888, AH05.1560, AH09.2567, AH09.2568 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1AG0030170, gene-QOZ80_1BG0080220 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0079800.1, HORVU.MOREX.r3.2HG0202590.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016239, gene-QYE76_047038, gene-QYE76_047040 ... |
| Poaceae | Oryza coarctata | 9 | Oco01G018030, Oco01G018300, Oco02G018190, Oco02G018540 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g50050.1, LOC_Os01g50760.1, LOC_Os04g56210.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_03G242500, gene-BS78_03G247700 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300549, Pt_Chr0300570, Pt_Chr0307281, Pt_Chr0503835 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G014950, Chr02G011820, Chr05G021850, Chr18G015010 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G593700, Tel2E01G849200, Tel3E01G427600 ... |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG053720, gene_TRIDC1BG061520 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS1A02G365800.1, TraesCS1B02G383400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb155590_P001, Zm00001eb342550_P002 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-12673, nbis-gene-13789, nbis-gene-24985 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g10970, Zma_g20595, Zma_g22130, Zma_g27306, Zma_g28713 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG02.616, evm.TU.LG09.2062, evm.TU.LG15.1460 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g22310, gene.Posoc02g22320 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.51, evm.TU.Scaffold_8_RagTag.349 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-19700, nbisL1-mrna-19701, nbisL1-mrna-20058 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15503 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17954, nbisL1-mrna-22351 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.769, evm.TU.utg000028l.29 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003684, Maker00010753 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3232, nbisL1-mrna-7985 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11264, nbisL1-mrna-22574 |
| Salicaceae | Populus euphratica | 1 | populus_peu10476 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627819, gene-LOC132636283 |
| Solanaceae | Solanum chilense | 3 | SOLCI005895800, SOLCI007039200, SOLCI007039400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001694, gene-LOC107001695, gene-LOC107007637 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17882, gene_4063 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2572, TC06G0542 |
| Zosteraceae | Zostera marina | 2 | Zosma01g03700.v3.1, Zosma04g17780.v3.1 |