Basic Information
Locus ID:
BniB02g063470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 58298693 | 58299523 | + | BniB02g063470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 30,859.80 Da | 47.63 | 89.42 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 106 | 152 | 1.4E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 106 | 173 | 3.01E-16 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 88 | 153 | 5.9E-16 | IPR036638 |
| SMART | SM00353 | finulus | 109 | 158 | 1.2E-13 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 103 | 152 | 16.875536 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 107 | - | - |
| Coils | Coil | Coil | 142 | 176 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46830.1 | NACL-inducible gene 1. Calcium-binding transcription factor involved in salt stress signaling. | 0 |
| RefSeq | XP_018479447.1 | PREDICTED: transcription factor bHLH28-like [Raphanus sativus] | 0 |
| Q9LUK7 | Transcription factor bHLH28 OS=Arabidopsis thaliana OX=3702 GN=BHLH28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7U3L5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology