Basic Information
Locus ID:
BniB02g063410.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 58260877 | 58262631 | + | BniB02g063410.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 63,948.10 Da | 44.78 | 67.47 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 401 | 478 | 2.54351E-50 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 57 | 243 | 2.0E-53 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 408 | 453 | 1.3E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 407 | 473 | 2.88E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 407 | 480 | 1.0E-16 | IPR036638 |
| SMART | SM00353 | finulus | 410 | 459 | 9.8E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 404 | 453 | 17.281994 | IPR011598 |
| ProSitePatterns | PS00163 | Fumarate lyases signature. | 316 | 325 | - | IPR020557 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 125 | - | - |
| Coils | Coil | Coil | 450 | 477 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46760.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_013598243.1 | PREDICTED: transcription factor MYC3 [Brassica oleracea var. oleracea] | 0 |
| Q9FIP9 | Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7U1P1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_068918 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology