Basic Information
Locus ID:
BniB02g062010.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Mitogen-Activated Protein Kinase Kinase Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 57466610 | 57467458 | - | BniB02g062010.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 31,506.34 Da | 52.28 | 82.98 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 31 | 277 | 9.3E-43 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 24 | 278 | 4.05E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 21 | 282 | 3.2E-56 | - |
| SMART | SM00220 | serkin_6 | 28 | 277 | 5.3E-59 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 28 | 277 | 37.007771 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 148 | 160 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40560.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_048618290.1 | mitogen-activated protein kinase kinase kinase 20-like [Brassica napus] | 0 |
| F4HRJ4 | Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816MD03 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C07P27660.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40500.1, AT2G40560.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10012219m.g.v1.0, Thhalv10017514m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04290.v2.2, Sp2g09540.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB01g004780.2N, BniB02g062010.2N, BniB03g062440.2N ... |