Basic Information
Locus ID:
BniB02g059110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 55723977 | 55725200 | - | BniB02g059110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 45,614.61 Da | 46.34 | 91.92 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 74 | 274 | 8.8E-52 | IPR003690 |
| Pfam | PF02536 | mTERF | 263 | 377 | 4.0E-39 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 154 | 387 | 2.9E-38 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 53 | 143 | 8.5E-13 | IPR038538 |
| SMART | SM00733 | mt_12 | 88 | 119 | 0.0037 | IPR003690 |
| SMART | SM00733 | mt_12 | 257 | 287 | 0.49 | IPR003690 |
| SMART | SM00733 | mt_12 | 292 | 323 | 0.0062 | IPR003690 |
| SMART | SM00733 | mt_12 | 222 | 252 | 0.14 | IPR003690 |
| SMART | SM00733 | mt_12 | 324 | 358 | 10.0 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61990.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_018458632.1 | PREDICTED: transcription termination factor MTERF2, chloroplastic-like [Raphanus sativus] | 0 |
| TrEMBL | A0A8X7U409 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_069345 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |