Basic Information
Locus ID:
BniB02g058860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 55513736 | 55515303 | + | BniB02g058860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 55,620.11 Da | 48.97 | 92.90 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 117 | 462 | 1.6E-117 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 273 | 472 | 4.1E-44 | IPR038538 |
| SMART | SM00733 | mt_12 | 131 | 162 | 2.7E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 409 | 443 | 0.63 | IPR003690 |
| SMART | SM00733 | mt_12 | 342 | 372 | 0.18 | IPR003690 |
| SMART | SM00733 | mt_12 | 272 | 302 | 21.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 167 | 199 | 70.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 307 | 337 | 7.4E-5 | IPR003690 |
| SMART | SM00733 | mt_12 | 239 | 268 | 1100.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 377 | 408 | 2.7E-4 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62085.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013742426.1 | uncharacterized protein LOC106445417 [Brassica napus] | 0 |
| TrEMBL | A0A8X7Q5Q6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_069372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |