Basic Information
Locus ID:
BniB02g058490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
replication factor C
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 55274779 | 55276680 | + | BniB02g058490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 36,685.91 Da | 40.70 | 92.80 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18140 | HLD_clamp_RFC | 171 | 233 | 8.18354E-19 | - |
| CDD | cd00009 | AAA | 29 | 163 | 9.66025E-26 | - |
| Pfam | PF08542 | Replication factor C C-terminal domain | 236 | 321 | 2.6E-20 | IPR013748 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 50 | 167 | 6.1E-14 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 12 | 234 | 9.25E-53 | IPR027417 |
| SUPERFAMILY | SSF48019 | post-AAA+ oligomerization domain-like | 235 | 326 | 8.08E-26 | IPR008921 |
| Gene3D | G3DSA:1.20.272.10 | - | 236 | 328 | 6.4E-31 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 171 | 4.0E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 172 | 235 | 2.5E-20 | - |
| SMART | SM00382 | AAA_5 | 46 | 172 | 1.4E-11 | IPR003593 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63160.1 | replication factor C 2. | 0 |
| RefSeq | XP_018452781.1 | PREDICTED: replication factor C subunit 2 [Raphanus sativus] | 0 |
| Q9CAM7 | Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Q774 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_069408 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7608 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14783 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003787 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g100920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23723, Sbi_jg7563 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12470 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001260 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51918, Sgl57213 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007444, gene:ENSEOMG00000021068 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0007870, CQ.Regalona.r1.5BG0008380 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30143760 |
| Apiaceae | Apium graveolens | 1 | Ag2G00687 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G006950 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3107.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G05693 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G63160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023584m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g01430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g058490.2N, BniB03g033940.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq03G0439, Ceq04G0380, Ceq04G0532 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0542, Cgl04G0484 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0395s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1356 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003130 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10744, Lb2G10753 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1963, BH09.2130, CH09.2273 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0361350, gene-QOZ80_5BG0409780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0187470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045617 |
| Poaceae | Oryza coarctata | 2 | Oco07G013440, Oco08G012980 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g48060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G203600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301621, Pt_Chr0307353 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr18G016110, Chr22G000150, Chr25G005210, Chr30G005070 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G688600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG057980, gene_TRIDC2BG060880 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G401300.1, TraesCS2B02G419300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb428750_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13550, nbis-gene-24718 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27465, Zma_g28908 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.Contig2.4, evm.TU.Contig27.1, evm.TU.LG04.3428 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g11580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.222 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18157 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9702 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8488 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.238 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018412 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16065 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10858 |
| Salicaceae | Populus euphratica | 1 | populus_peu34355 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634954 |
| Solanaceae | Solanum chilense | 1 | SOLCI001252200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026904 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23496_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4312 |
| Zosteraceae | Zostera marina | 2 | Zosma01g21420.v3.1, Zosma04g12020.v3.1 |