Basic Information
Locus ID:
BniB02g058210.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 55161904 | 55163963 | - | BniB02g058210.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 45,031.65 Da | 33.98 | 92.86 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 50 | 211 | 1.10956E-94 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 267 | 403 | 1.56546E-69 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 268 | 391 | 2.5E-16 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 47 | 218 | 4.5E-36 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 47 | 226 | 3.33E-45 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 267 | 413 | 7.33E-33 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 43 | 221 | 1.1E-62 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 255 | 402 | 1.8E-42 | - |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 280 | 299 | - | IPR000399 |
| Coils | Coil | Coil | 181 | 201 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_013618619.1 | PREDICTED: pyruvate decarboxylase 4 [Brassica oleracea var. oleracea] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9QD73 | pyruvate decarboxylase OS=Brassica cretica OX=69181 GN=F2Q69_00018243 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology