Basic Information
Locus ID:
BniB02g057140.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 54743740 | 54746007 | - | BniB02g057140.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 67,012.73 Da | 47.68 | 89.97 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 33 | 137 | 2.83211E-44 | - |
| Pfam | PF00651 | BTB/POZ domain | 38 | 128 | 4.0E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 222 | 480 | 1.4E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 29 | 129 | 2.41E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 27 | 168 | 2.8E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 41 | 136 | 0.0032 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 41 | 112 | 12.308835 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 222 | 504 | 88.158913 | IPR027356 |
| Coils | Coil | Coil | 539 | 566 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_018442319.1 | PREDICTED: BTB/POZ domain-containing protein At5g03250-like isoform X1 [Raphanus sativus] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7Q2F7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_069515 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology