Basic Information
Locus ID:
BniB02g056730.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
RPS28E
Description:
ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 54556711 | 54559200 | + | BniB02g056730.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 46,172.53 Da | 39.92 | 78.43 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04457 | S1_S28E | 336 | 394 | 1.58316E-33 | IPR000289 |
| Pfam | PF01200 | Ribosomal protein S28e | 334 | 393 | 8.0E-29 | IPR000289 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 331 | 394 | 1.11E-22 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 329 | 394 | 1.8E-32 | - |
| ProSitePatterns | PS00961 | Ribosomal protein S28e signature. | 385 | 393 | - | IPR028626 |
| Hamap | MF_00292 | 30S ribosomal protein S28e [rps28e]. | 331 | 394 | 20.014009 | IPR000289 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00893.1 | 0 | |
| RefSeq | XP_013730126.3 | F-box protein At4g00893-like [Brassica napus] | 0 |
| Q1G391 | F-box protein At4g00893 OS=Arabidopsis thaliana OX=3702 GN=At4g00893 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9IRJ2 | F-box domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q68_00023423 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology