Basic Information
Locus ID:
BniB02g054860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 53768083 | 53768991 | - | BniB02g054860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 23,331.06 Da | 59.44 | 80.67 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 88 | 140 | 1.0291E-10 | - |
| Pfam | PF12906 | RING-variant domain | 88 | 139 | 2.0E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 84 | 141 | 2.65E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 147 | 2.8E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 87 | 140 | 1.4E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 80 | 146 | 17.624956 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_013728516.1 | uncharacterized protein BNAC09G49660D [Brassica napus] | 0 |
| TrEMBL | A0A8X7U384 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_069760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology