Basic Information
Locus ID:
BniB02g054180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 53456985 | 53464948 | + | BniB02g054180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 130,759.56 Da | 42.67 | 78.38 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 55 | 179 | 5.37859E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 197 | 525 | 2.75541E-169 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 624 | 874 | 8.9E-78 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1094 | 1.2E-56 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 199 | 520 | 7.6E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 61 | 181 | 3.9E-19 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 52 | 188 | 8.83E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 194 | 551 | 2.55E-97 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 196 | 524 | 4.0E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 799 | 1.6E-45 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 195 | 2.2E-51 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 1.6E-28 | - |
| SMART | SM00061 | math_3 | 56 | 160 | 3.0E-19 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 54 | 179 | 37.829338 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 523 | 40.146183 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 439 | 456 | - | IPR018200 |
| Coils | Coil | Coil | 536 | 559 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_018445477.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Raphanus sativus] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0KBX0 | ubiquitinyl hydrolase 1 OS=Raphanus sativus OX=3726 GN=LOC108817319 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology