Basic Information
Locus ID:
BniB02g053970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 53374923 | 53381227 | - | BniB02g053970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 142,706.59 Da | 44.00 | 91.08 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 955 | 1228 | 2.8E-33 | IPR000719 |
| Pfam | PF02536 | mTERF | 450 | 532 | 1.4E-10 | IPR003690 |
| Pfam | PF02536 | mTERF | 164 | 293 | 2.3E-6 | IPR003690 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 571 | 609 | 8.1E-6 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 571 | 785 | 1.87E-31 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 931 | 1230 | 2.73E-63 | IPR011009 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 157 | 329 | 3.9E-11 | IPR038538 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1034 | 1257 | 3.7E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 568 | 796 | 8.3E-43 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 919 | 1031 | 2.2E-26 | - |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 330 | 549 | 1.4E-35 | IPR038538 |
| SMART | SM00220 | serkin_6 | 954 | 1234 | 8.1E-17 | IPR000719 |
| SMART | SM00733 | mt_12 | 435 | 465 | 730.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 318 | 349 | 220.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 179 | 209 | 110.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 470 | 501 | 4.2 | IPR003690 |
| SMART | SM00733 | mt_12 | 502 | 532 | 2800.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 214 | 245 | 0.38 | IPR003690 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 729 | 751 | 7.196008 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 954 | 1234 | 33.17746 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1076 | 1088 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 58 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06820.1 | STRUBBELIG-receptor family 2. | 0 |
| RefSeq | XP_018445825.1 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 2 [Raphanus sativus] | 0 |
| Q9FG24 | Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana OX=3702 GN=SRF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7Q8F2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_070008 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4384 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4708 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g060500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59211, Sbi_jg63417 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23477 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018455 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02640, Sgl07798 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000029024 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019930, CQ.Regalona.r1.3BG0020650 |
| Apiaceae | Apium graveolens | 1 | Ag10G03031 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G007160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705384 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.791.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G30517, Ftri3G13907 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012782m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053970.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1139 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1306 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g28260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1739 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00030680 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16436 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG07.570, evm.TU.LG15.372, evm.TU.LG15.373 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1227 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6396 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13306 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.769 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017085 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7496 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13417 |
| Salicaceae | Populus euphratica | 1 | populus_peu12293 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608785, gene-LOC132637250 |
| Solanaceae | Solanum chilense | 1 | SOLCI000372100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013267 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5158 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1618 |