Basic Information
Locus ID:
BniB02g053740.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 53263356 | 53270207 | - | BniB02g053740.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 179,960.05 Da | 46.26 | 81.62 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13875 | CuRO_2_LCC_plant | 74 | 211 | 1.97607E-75 | IPR034285 |
| CDD | cd13897 | CuRO_3_LCC_plant | 318 | 456 | 2.5428E-86 | IPR034289 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 811 | 1041 | 8.8E-42 | IPR001245 |
| Pfam | PF07731 | Multicopper oxidase | 323 | 456 | 7.3E-40 | IPR011706 |
| Pfam | PF00394 | Multicopper oxidase | 73 | 213 | 2.7E-37 | IPR001117 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1085 | 1122 | 7.1E-7 | IPR013210 |
| Pfam | PF07732 | Multicopper oxidase | 2 | 58 | 1.4E-18 | IPR011707 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1376 | 1516 | 3.2E-14 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1359 | 1591 | 3.42E-31 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 783 | 1061 | 3.42E-49 | IPR011009 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 70 | 250 | 9.4E-42 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 2 | 87 | 9.41E-18 | IPR008972 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 255 | 458 | 6.84E-42 | IPR008972 |
| SUPERFAMILY | SSF52058 | L domain-like | 1082 | 1192 | 1.11E-16 | - |
| Gene3D | G3DSA:2.60.40.420 | - | 1 | 65 | 5.8E-15 | IPR008972 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1082 | 1201 | 3.1E-27 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1525 | 1609 | 1.4E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1449 | 1524 | 4.4E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 787 | 1049 | 4.5E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1338 | 1447 | 1.6E-14 | - |
| Gene3D | G3DSA:2.60.40.420 | - | 71 | 251 | 1.1E-39 | IPR008972 |
| Gene3D | G3DSA:2.60.40.420 | - | 276 | 475 | 6.7E-58 | IPR008972 |
| TIGRFAM | TIGR03389 | laccase: laccase | 1 | 462 | 4.5E-200 | IPR017761 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 793 | 1043 | 25.149345 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1364 | 1610 | 11.637242 | IPR000719 |
| ProSitePatterns | PS00079 | Multicopper oxidases signature 1. | 431 | 451 | - | IPR033138 |
| ProSitePatterns | PS00080 | Multicopper oxidases signature 2. | 436 | 447 | - | IPR002355 |
| PRINTS | PR01217 | Proline rich extensin signature | 1245 | 1262 | 5.1E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 1225 | 1241 | 5.1E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 1204 | 1225 | 5.1E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 1266 | 1291 | 5.1E-10 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07140.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_018446929.1 | PREDICTED: serine/threonine-protein kinase STY8 isoform X1 [Raphanus sativus] | 0 |
| Q9LYQ2 | Laccase-13 OS=Arabidopsis thaliana OX=3702 GN=LAC13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S2ARR6 | Laccase OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS14685 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16675 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7070 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028163 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26850, Sbi_jg33721 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8410 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003049 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73123, Sgl76670 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000039129, gene:ENSEOMG00000039784 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001580, CQ.Regalona.r1.9BG0004110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30060980, pistato.v30063830 |
| Apiaceae | Apium graveolens | 1 | Ag6G02081 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013510 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710336 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.588.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G29504 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G07140.1, AT5G58520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013017m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g20210.v2.2, Sp6g35760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g053740.2N, BniB08g013120.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1833 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1891 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18290 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6542, nbisL1-mrna-9927 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1048 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016309, Pov_00016339 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3968, BH01.4364, CH01.4597 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244500, gene-QOZ80_3BG0283530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384360.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_068687, gene-QYE76_068733 |
| Poaceae | Oryza coarctata | 2 | Oco05G010820, Oco06G011060 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g18430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G387200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102438, Pt_Chr0102470 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032190, Chr04G008870, Chr07G002800, Chr12G007430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G342900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015430, gene_TRIDC4BG033500 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111900.1, TraesCS4B02G192000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013650_P002, Zm00001eb396880_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3601 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3825 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1654, evm.TU.LG26.13 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37630 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24704, nbisL1-mrna-30054 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15690 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16327 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015407 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4476 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20827 |
| Salicaceae | Populus euphratica | 2 | populus_peu01722, populus_peu36092 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606391 |
| Solanaceae | Solanum chilense | 1 | SOLCI002069900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021737 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3685 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2342 |