Basic Information
Locus ID:
BniB02g053610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 53202130 | 53205927 | - | BniB02g053610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 137,561.59 Da | 33.70 | 104.02 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 996 | 1265 | 1.65096E-102 | - |
| Pfam | PF13855 | Leucine rich repeat | 651 | 711 | 2.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 137 | 154 | 1.1 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 258 | 280 | 1.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 542 | 557 | 1.0 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 993 | 1261 | 7.4E-47 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 63 | 1.1E-12 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 599 | 883 | 3.57E-61 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 176 | 329 | 6.12E-27 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 971 | 1262 | 3.64E-79 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 94 | 582 | 2.35E-63 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 333 | 591 | 1.6E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 178 | 6.1E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 592 | 892 | 3.0E-87 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 179 | 332 | 8.8E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1066 | 1265 | 2.7E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 954 | 1065 | 7.0E-37 | - |
| SMART | SM00369 | LRR_typ_2 | 159 | 183 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 256 | 280 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 844 | 869 | 79.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 89 | 112 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 722 | 746 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 796 | 820 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 518 | 542 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 698 | 721 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 113 | 137 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 208 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 650 | 674 | 1.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 423 | 447 | 300.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 650 | 682 | 32.0 | - |
| SMART | SM00369 | LRR_typ_2 | 566 | 592 | 190.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 423 | 449 | 260.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 256 | 277 | 640.0 | - |
| SMART | SM00220 | serkin_6 | 990 | 1263 | 1.4E-35 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 159 | 192 | 720.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 820 | 846 | 35.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 722 | 745 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 208 | 234 | 510.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 161 | 183 | 7.149804 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 990 | 1265 | 38.110222 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 652 | 674 | 7.604145 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 996 | 1019 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1112 | 1124 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 162 | 175 | 2.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 650 | 663 | 2.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_006399210.1 | leucine-rich repeat receptor protein kinase EMS1 [Eutrema salsugineum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | V4LLH5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10012465mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |