Basic Information
Locus ID:
BniB02g052620.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 52740854 | 52743186 | + | BniB02g052620.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 64,778.45 Da | 47.53 | 85.72 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 261 | 553 | 1.28184E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 553 | 7.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 383 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 341 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 510 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 6.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 553 | 1.13E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 573 | 4.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 250 | 516 | 1.9E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 514 | 554 | 3.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 465 | 31.0 | IPR001680 |
| SMART | SM00668 | ctlh | 97 | 154 | 5.3E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 385 | 425 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 511 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 0.86 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 4.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 1.7E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 350 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 305 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 345 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 556 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 563 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 298 | 10.68014 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 104 | 154 | 10.906389 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 64 | 96 | 7.960748 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 541 | 555 | 3.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 370 | 384 | 3.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 3.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_013612442.1 | PREDICTED: WD repeat-containing protein 26-like [Brassica oleracea var. oleracea] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3EGT9 | WD repeat-containing protein 26 homolog OS=Brassica oleracea var. oleracea OX=109376 GN=106318845 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology