Basic Information
Locus ID:
BniB02g051810.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 52423642 | 52426516 | - | BniB02g051810.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 99,431.23 Da | 37.02 | 92.26 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 302 | 3.40001E-77 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 0.0031 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 195 | 275 | 1.0E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 86 | 121 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 9.0E-6 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 326 | 755 | 2.7E-119 | IPR006692 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 178 | 565 | 7.85E-24 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 299 | 7.56E-72 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 627 | 799 | 4.8E-62 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 304 | 2.0E-108 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 302 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 8.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 261 | 6.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 3.5E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 166 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 9.678328 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 229 | 261 | 12.367405 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 270 | 15.955617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 218 | 11.260138 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 166 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.943775 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 4.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 4.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 203 | 217 | 4.9E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_048625353.1 | coatomer subunit alpha-1-like [Brassica napus] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7S469 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_037140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology