Basic Information
Locus ID:
BniB02g051560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 52295040 | 52295924 | - | BniB02g051560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 32,701.53 Da | 76.33 | 73.23 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 142 | 185 | 3.17592E-20 | - |
| Pfam | PF13639 | Ring finger domain | 142 | 185 | 9.8E-14 | IPR001841 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 32 | 41 | 4.71E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 191 | 5.05E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 194 | 4.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 143 | 184 | 3.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 185 | 12.666314 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 223 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10380.1 | RING/U-box superfamily protein. Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. | 0 |
| RefSeq | XP_018445233.1 | PREDICTED: E3 ubiquitin-protein ligase RING1 [Raphanus sativus] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SAT9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_037111 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology