Basic Information
Locus ID:
BniB02g050070.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 51536015 | 51538656 | + | BniB02g050070.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 78,114.59 Da | 41.20 | 74.67 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 425 | 685 | 6.05894E-85 | - |
| CDD | cd01989 | STK_N | 15 | 151 | 5.22014E-50 | - |
| Pfam | PF00069 | Protein kinase domain | 421 | 672 | 6.1E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 673 | 5.53E-67 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 148 | 6.78E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 492 | 696 | 5.6E-50 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 5 | 151 | 5.0E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 398 | 491 | 8.8E-26 | - |
| SMART | SM00220 | serkin_6 | 419 | 679 | 6.8E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 419 | 683 | 35.156216 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 537 | 549 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 207 | - | - |
| Coils | Coil | Coil | 345 | 365 | - | - |
| Coils | Coil | Coil | 285 | 305 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_013720824.1 | U-box domain-containing protein 51 isoform X1 [Brassica napus] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0D3EG24 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology