Basic Information
Locus ID:
BniB02g049950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 51490955 | 51496056 | + | BniB02g049950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 92,474.84 Da | 60.88 | 76.43 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 181 | 334 | 1.72938E-36 | - |
| CDD | cd00821 | PH | 21 | 116 | 1.35043E-11 | - |
| Pfam | PF00169 | PH domain | 19 | 124 | 4.2E-13 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 5.3E-29 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 602 | 681 | 2.3E-19 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 16 | 128 | 8.31E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 371 | 9.22E-30 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 127 | 2.3E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 150 | 371 | 3.5E-38 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 178 | 368 | 1.8E-23 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 1.4E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.2991 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 371 | 28.686035 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 540 | - | - |
| Coils | Coil | Coil | 592 | 626 | - | - |
| Coils | Coil | Coil | 791 | 818 | - | - |
| Coils | Coil | Coil | 336 | 356 | - | - |
| Coils | Coil | Coil | 650 | 677 | - | - |
| Coils | Coil | Coil | 567 | 587 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12150.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_013611371.1 | PREDICTED: rho GTPase-activating protein 6 [Brassica oleracea var. oleracea] | 0 |
| Q9FMP8 | Rho GTPase-activating protein 6 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6E1F8 | Rho GTPase-activating protein 7-like OS=Brassica oleracea OX=3712 GN=BOLC9T59303H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology