Basic Information
Locus ID:
BniB02g048950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 51022968 | 51025169 | - | BniB02g048950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 67,955.46 Da | 40.30 | 89.64 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 205 | 471 | 3.1E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 26 | 111 | 1.1E-11 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 15 | 127 | 4.39E-21 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 15 | 115 | 3.1E-16 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 131 | 1.4E-9 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 205 | 495 | 89.47924 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 95 | 12.991342 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 607 | - | - |
| Coils | Coil | Coil | 538 | 558 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13600.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_009121746.1 | putative BTB/POZ domain-containing protein At5g13600 [Brassica rapa] | 0 |
| Q9FNB3 | Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana OX=3702 GN=At5g13600 PE=3 SV=1 | 0 | |
| TrEMBL | M4CX68 | Phototropic-responsive NPH3 family protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology