Basic Information
Locus ID:
BniB02g048910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Elongation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 50998225 | 51001809 | - | BniB02g048910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 74,539.61 Da | 41.70 | 90.64 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16263 | BipA_III | 383 | 461 | 2.1087E-46 | - |
| CDD | cd03710 | BipA_TypA_C | 476 | 555 | 8.71044E-37 | IPR035651 |
| CDD | cd01891 | TypA_BipA | 82 | 275 | 1.11216E-133 | - |
| CDD | cd03691 | BipA_TypA_II | 283 | 376 | 7.51048E-40 | - |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 297 | 366 | 7.3E-11 | IPR004161 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 82 | 273 | 1.1E-52 | IPR000795 |
| Pfam | PF00679 | Elongation factor G C-terminus | 474 | 559 | 3.1E-20 | IPR000640 |
| SUPERFAMILY | SSF50447 | Translation proteins | 229 | 377 | 1.61E-29 | IPR009000 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 476 | 591 | 7.67E-28 | IPR035647 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 75 | 283 | 7.71E-54 | IPR027417 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 381 | 465 | 4.32E-13 | IPR035647 |
| Gene3D | G3DSA:3.30.70.240 | - | 467 | 560 | 3.2E-113 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 80 | 276 | 2.4E-61 | IPR027417 |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 277 | 377 | 2.7E-28 | - |
| Gene3D | G3DSA:2.40.50.250 | bipa protein | 561 | 640 | 3.2E-113 | IPR042116 |
| Gene3D | G3DSA:3.30.70.870 | Elongation Factor G (Translational Gtpase), domain 3 | 384 | 667 | 3.2E-113 | - |
| SMART | SM00838 | EFG_C_a | 473 | 562 | 5.6E-5 | IPR000640 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 84 | 233 | 7.2E-23 | IPR005225 |
| TIGRFAM | TIGR01394 | TypA_BipA: GTP-binding protein TypA/BipA | 83 | 673 | 1.9E-278 | IPR006298 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 81 | 276 | 51.625175 | IPR000795 |
| ProSitePatterns | PS00301 | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 122 | 137 | - | IPR031157 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 149 | 159 | 7.6E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 129 | 137 | 7.6E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 85 | 98 | 7.6E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 165 | 176 | 7.6E-15 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 201 | 210 | 7.6E-15 | IPR000795 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13650.1 | elongation factor family protein. | 0 |
| RefSeq | XP_013612006.1 | PREDICTED: GTP-binding protein TypA/BipA homolog [Brassica oleracea var. oleracea] | 0 |
| F4K410 | Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6DQV0 | Tr-type G domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC9T59190H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15920 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4664 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021787 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59302, Sbi_jg63322 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23556 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018394 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02687, Sgl07844 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012880, gene:ENSEOMG00000029837 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0020930, CQ.Regalona.r1.3BG0021720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30186830 |
| Apiaceae | Apium graveolens | 1 | Ag10G02361 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704562 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1492.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17070, Ftri12G12173 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13650.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012883m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048910.2N, BniB05g024670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0181s00024.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06410 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2474 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006657 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16252 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1272, AH07.1297, BH07.1356, CH07.1074 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0109660, gene-QOZ80_2BG0163450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0587920.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_022237 |
| Poaceae | Oryza coarctata | 1 | Oco03G007830 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g18450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G123000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201903 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G000590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G405100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG028680, gene_TRIDC6BG036660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G192800.1, TraesCS6B02G224800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb236900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34092 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15323 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1221, evm.TU.LG21.821 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g09990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1181 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6438 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2765 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.795 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016654 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10979 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13379 |
| Salicaceae | Populus euphratica | 1 | populus_peu10970 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636519 |
| Solanaceae | Solanum chilense | 1 | SOLCI005990500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014339 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4057 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2437 |
| Zosteraceae | Zostera marina | 2 | Zosma03g05350.v3.1, Zosma07g02630.v3.1 |