Basic Information
Locus ID:
BniB02g046670.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 50058999 | 50060986 | + | BniB02g046670.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 34,337.36 Da | 43.47 | 74.92 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 72 | 3.42E-19 | - |
| Pfam | PF00627 | UBA/TS-N domain | 127 | 162 | 8.0E-5 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 75 | 1.5E-12 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 197 | 252 | 5.9E-12 | IPR015360 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 1.91E-17 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 196 | 259 | 1.44E-11 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 122 | 171 | 1.36E-5 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 189 | 253 | 1.8E-14 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 76 | 2.4E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 118 | 167 | 1.1E-9 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.4E-15 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.540962 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 311 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022565536.1 | ubiquitin receptor RAD23c isoform X1 [Brassica napus] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7SAD2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036886 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology