Basic Information
Locus ID:
BniB02g045900.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
nucleic acid binding nucleotide binding oxidoreductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 49679063 | 49680343 | - | BniB02g045900.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 28,092.00 Da | 34.70 | 78.57 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 16 | 74 | 8.4E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 10 | 88 | 1.13E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 11 | 111 | 5.8E-13 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 14 | 80 | 8.3E-10 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 84 | 12.969665 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 266 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16840.1 | binding partner of acd11 1. | 0 |
| RefSeq | XP_013683064.1 | binding partner of ACD11 1-like isoform X2 [Brassica napus] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7UF66 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_056311 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology