Basic Information
Locus ID:
BniB02g045290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 49394576 | 49396444 | - | BniB02g045290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 64,082.62 Da | 52.90 | 89.96 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 187 | 428 | 7.3E-57 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 11 | 101 | 1.41E-11 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 116 | 4.5E-8 | IPR011333 |
| SMART | SM00225 | BTB_4 | 17 | 113 | 1.7E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 187 | 452 | 56.71291 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 17 | 84 | 8.751532 | IPR000210 |
| Coils | Coil | Coil | 454 | 474 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17580.2 | - | 0 |
| RefSeq | XP_009107530.1 | BTB/POZ domain-containing protein At5g17580 [Brassica rapa] | 0 |
| Q9LF66 | BTB/POZ domain-containing protein At5g17580 OS=Arabidopsis thaliana OX=3702 GN=At5g17580 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7V316 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036759 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1692, jg29103, jg29104 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18171 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013414, Ah015195 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43051, Sbi_jg45652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11496 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002016 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35807, Sgl35813, Sgl41084, Sgl41122 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012178, gene:ENSEOMG00000045914 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014940, CQ.Regalona.r1.8BG0016290 |
| Apiaceae | Apium graveolens | 1 | Ag1G00365 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G03834 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G03510.1, AT5G17580.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015963m.g.v1.0, Thhalv10022312m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g02500.v2.2, Sp6g26640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g059850.2N, BniB02g045290.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g07590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1884 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00031221, Pov_00038962 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.348, evm.TU.LG12.1360 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.508, evm.TU.Scaffold_1_RagTag.516 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7654 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3763 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5536 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.313 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20118 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-648 |
| Salicaceae | Populus euphratica | 2 | populus_peu33561, populus_peu33562 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132612655, gene-LOC132645135 |
| Solanaceae | Solanum chilense | 2 | SOLCI001011800, SOLCI004575200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107022477, gene-LOC107024825 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0315 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11550.v3.1 |