Basic Information
Locus ID:
BniB02g043320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
GTPase-activator protein for Rho-like GTPases
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 48315006 | 48321216 | - | BniB02g043320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 93,400.84 Da | 59.62 | 76.83 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 176 | 313 | 3.9224E-34 | - |
| CDD | cd00821 | PH | 21 | 120 | 2.52726E-10 | - |
| Pfam | PF00620 | RhoGAP domain | 176 | 320 | 1.6E-31 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 587 | 666 | 1.5E-20 | IPR025757 |
| Pfam | PF00169 | PH domain | 19 | 124 | 3.3E-12 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 15 | 131 | 1.04E-16 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 176 | 369 | 1.53E-33 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 127 | 3.5E-16 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 143 | 369 | 8.8E-41 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 173 | 364 | 8.5E-25 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 7.4E-15 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 14.3684 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 167 | 367 | 30.513508 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 768 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 409 | - | - |
| Coils | Coil | Coil | 552 | 572 | - | - |
| Coils | Coil | Coil | 797 | 817 | - | - |
| Coils | Coil | Coil | 577 | 611 | - | - |
| Coils | Coil | Coil | 635 | 669 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_009120893.1 | rho GTPase-activating protein 7 isoform X2 [Brassica rapa] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397XL26 | Rho GTPase-activating protein 7-like OS=Brassica campestris OX=3711 GN=BRARA_J01647 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology