Basic Information
Locus ID:
BniB02g043240.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CDPK19
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 48287861 | 48290222 | + | BniB02g043240.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 60,084.78 Da | 40.64 | 80.00 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 436 | 498 | 1.75151E-17 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 58 | 315 | 3.13745E-144 | - |
| Pfam | PF13499 | EF-hand domain pair | 364 | 423 | 2.3E-9 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 58 | 316 | 4.4E-77 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 435 | 498 | 2.5E-15 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 58 | 322 | 2.97E-87 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 524 | 1.11E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 325 | 500 | 8.8E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 143 | 3.5E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 144 | 324 | 5.0E-60 | - |
| SMART | SM00220 | serkin_6 | 58 | 316 | 7.3E-106 | IPR000719 |
| SMART | SM00054 | efh_1 | 363 | 391 | 3.2E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 400 | 428 | 0.52 | IPR002048 |
| SMART | SM00054 | efh_1 | 472 | 500 | 4.3E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 436 | 464 | 0.28 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 432 | 467 | 11.472807 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 58 | 316 | 49.912113 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 468 | 503 | 14.652882 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 10.050141 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 359 | 394 | 13.09074 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 178 | 190 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 64 | 87 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 445 | 457 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 481 | 493 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_018443957.1 | PREDICTED: calcium-dependent protein kinase 8-like [Raphanus sativus] | 0 |
| Q42438 | Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CPK8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0K8R2 | calcium-dependent protein kinase 8-like OS=Raphanus sativus OX=3726 GN=LOC108815920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology