Basic Information
Locus ID:
BniB02g042470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Translocase of chloroplast 159/132, membrane anchor domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 47854232 | 47857013 | + | BniB02g042470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 88,083.50 Da | 47.87 | 84.22 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01853 | Toc34_like | 136 | 383 | 7.65224E-117 | - |
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 506 | 772 | 1.2E-108 | IPR024283 |
| Pfam | PF04548 | AIG1 family | 167 | 316 | 8.4E-24 | IPR006703 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 158 | 302 | 1.48E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 378 | 1.6E-55 | IPR027417 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 164 | 393 | 29.678829 | IPR006703 |
| Coils | Coil | Coil | 477 | 505 | - | - |
| Coils | Coil | Coil | 417 | 437 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_018443860.1 | PREDICTED: translocase of chloroplast 90, chloroplastic [Raphanus sativus] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0K786 | translocase of chloroplast 90, chloroplastic OS=Raphanus sativus OX=3726 GN=LOC108815842 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology