halophFGD

Basic Information

Locus ID: BniB02g041990.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B2	47569966	47571297	-	BniB02g041990.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	50,609.65 Da	47.48	83.32	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	15	50	1.9E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	14	63	1.83E-9	IPR036047
SMART	SM00256	fbox_2	10	49	0.0018	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G26010.1	Galactose oxidase/kelch repeat superfamily protein.	0
RefSeq	XP_013609278.1	PREDICTED: F-box protein At3g26010-like [Brassica oleracea var. oleracea]	0
Swiss-Prot	Q9LU90	F-box protein At3g26010 OS=Arabidopsis thaliana OX=3702 GN=At3g26010 PE=2 SV=1	0
TrEMBL	A0A8X7S5J0	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_037316 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	10	AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... AT3G26010.1, AT3G28223.1, AT3G28280.1, AT3G28330.1, AT3G48220.1, AT4G22430.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... Thhalv10009395m.g.v1.0, Thhalv10009727m.g.v1.0, Thhalv10011517m.g.v1.0, Thhalv10013759m.g.v1.0, Thhalv10019528m.g.v1.0, Thhalv10022100m.g.v1.0, Thhalv10023522m.g.v1.0, Thhalv10023870m.g.v1.0, Thhalv10024137m.g.v1.0, Thhalv10027176m.g.v1.0, Thhalv10028185m.g.v1.0, Thhalv10029227m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... Sp5g25320.v2.2, SpUn0003_0080.v2.2, SpUn0137_0030.v2.2
Brassicaceae	Brassica nigra	20	BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... BniB02g040930.2N, BniB02g041990.2N, BniB02g042880.2N, BniB02g072790.2N, BniB02g080470.2N, BniB03g022200.2N, BniB04g006950.2N, BniB04g019910.2N, BniB04g057180.2N, BniB04g057190.2N, BniB04g060460.2N, BniB04g060490.2N, BniB04g060520.2N, BniB05g016030.2N, BniB05g026460.2N, BniB06g034010.2N, BniB06g034020.2N
Plantaginaceae	Plantago ovata	1	Pov_00032378