Basic Information
Locus ID:
BniB02g041700.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 47393035 | 47396951 | - | BniB02g041700.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 93,938.57 Da | 36.92 | 86.05 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 599 | 646 | 1.4E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 458 | 507 | 4.4E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 325 | 349 | 0.53 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 709 | 738 | 0.0022 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 666 | 697 | 2.6E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 529 | 576 | 1.1E-12 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 13 | 268 | 2.3E-62 | IPR000719 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 376 | 436 | 2.7E-16 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 282 | 4.05E-80 | IPR011009 |
| SUPERFAMILY | SSF81901 | HCP-like | 390 | 731 | 2.07E-6 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 311 | 434 | 3.2E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 435 | 545 | 3.5E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 546 | 647 | 5.7E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 648 | 760 | 1.7E-25 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 5 | 306 | 2.5E-90 | - |
| SMART | SM00220 | serkin_6 | 13 | 268 | 6.4E-86 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 602 | 636 | 1.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 568 | 601 | 0.0011 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 462 | 495 | 1.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 638 | 671 | 4.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 672 | 706 | 3.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 391 | 423 | 1.9E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 324 | 353 | 4.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 533 | 565 | 8.0E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 355 | 389 | 0.0015 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 426 | 455 | 9.5E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 670 | 705 | 9.711769 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 706 | 740 | 10.380408 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 318 | 352 | 9.898111 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 353 | 387 | 9.361008 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 600 | 634 | 11.092894 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 565 | 599 | 9.119859 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 423 | 457 | 10.029647 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 635 | 669 | 11.805378 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 494 | 529 | 9.328124 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 268 | 46.110069 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 459 | 493 | 11.39981 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 530 | 564 | 13.361882 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 388 | 422 | 12.967276 | IPR002885 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 132 | 144 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21222.1 | protein kinase family protein. | 0 |
| RefSeq | XP_009120716.2 | pentatricopeptide repeat-containing protein At5g21222 isoform X3 [Brassica rapa] | 0 |
| Q8S9D1 | Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1 | 0 | |
| TrEMBL | M4CDT6 | Protein kinase domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3824, jg7860 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10714, gene_8166 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014544, Ah034904 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16657, Seu_jg19774 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007807 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30253400, pistato.v30256590 |
| Apiaceae | Apium graveolens | 2 | Ag10G01538, Ag7G00293 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G012070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710907 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G24253 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G21222.1, AT5G25630.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g21900.v2.2, Sp6g23340.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2119, Ceq06G1498 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G2313, Cgl04G2324, Cgl06G1553 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15860 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1088, evm.TU.LG07.775 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003850 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34995, Lb7G35002 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2290, BH07.3959, CH06.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0248630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051474, gene-QYE76_051482 |
| Poaceae | Oryza coarctata | 2 | Oco01G005680, Oco02G005770 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G191200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204886, Pt_Chr0205057 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G014820, Chr21G007420, Chr31G007880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G276300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG020600, gene_TRIDC3BG030970 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb315460_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29714 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13310, gene.Posoc09g07670 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60417.2, evm.TU.60418.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25631 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14993 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4712 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1113 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001456 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14184, nbisL1-mrna-9731 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21067, nbisL1-mrna-996 |
| Salicaceae | Populus euphratica | 4 | populus_peu04868, populus_peu12782, populus_peu21928 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603462, gene-LOC132635663 |
| Solanaceae | Solanum chilense | 2 | SOLCI000411300, SOLCI005497300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026118, gene-LOC107028521 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32841_chr09_-, STRG.3917_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0334, TC12G1292 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13580.v3.1 |