Basic Information
Locus ID:
BniB02g041530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 47298892 | 47304596 | + | BniB02g041530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 98,779.66 Da | 44.07 | 81.87 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 700 | 870 | 8.04582E-63 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 279 | 869 | 5.9E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 277 | 871 | 3.34E-107 | IPR038765 |
| Gene3D | G3DSA:3.30.2230.10 | - | 10 | 128 | 3.4E-5 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 269 | 503 | 1.1E-64 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 688 | 876 | 2.7E-56 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 279 | 872 | 56.969334 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 815 | 832 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 280 | 295 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 651 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_009120691.1 | ubiquitin carboxyl-terminal hydrolase 8 [Brassica rapa] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7V2N1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036456 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology