Basic Information
Locus ID:
BniB02g039660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 46181253 | 46183039 | + | BniB02g039660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.35 | 64,972.40 Da | 54.11 | 81.90 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 362 | 413 | 5.3E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 228 | 270 | 5.4E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 58 | 100 | 1.1E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 114 | 157 | 4.5E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 466 | 535 | 1.2E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 308 | 421 | 2.79E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 195 | 283 | 6.43E-21 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 28 | 104 | 4.49E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 84 | 169 | 4.71E-16 | - |
| SMART | SM00109 | c1_12 | 59 | 114 | 0.51 | IPR002219 |
| SMART | SM00109 | c1_12 | 115 | 167 | 0.22 | IPR002219 |
| SMART | SM00109 | c1_12 | 281 | 332 | 3.6 | IPR002219 |
| SMART | SM00109 | c1_12 | 365 | 418 | 0.082 | IPR002219 |
| SMART | SM00109 | c1_12 | 483 | 530 | 0.99 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 55 | 114 | 8.0196 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59920.1 | Cysteine/Histidine-rich C1 domain family protein. Isolated in a screen for UV-B insensitive mutants using a hypocotyl growth inhibition assay. Mutants are defective in a number of UV-B responses. | 0 |
| RefSeq | XP_020884059.1 | uncharacterized protein LOC110229147 [Arabidopsis lyrata subsp. lyrata] | 0 |
| TrEMBL | A0A8X7S4B2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036207 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |