Basic Information
Locus ID:
BniB02g039150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 45886197 | 45887441 | - | BniB02g039150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 44,350.51 Da | 80.52 | 61.23 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 203 | 247 | 2.6147E-21 | - |
| Pfam | PF13639 | Ring finger domain | 202 | 244 | 4.3E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 18 | 54 | 1.8E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 267 | 398 | 1.1E-35 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 251 | 4.99E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 250 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 203 | 243 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 244 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 120 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_013612675.1 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Brassica oleracea var. oleracea] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V3I7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036248 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology