Basic Information
Locus ID:
BniB02g038610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 45609594 | 45610828 | + | BniB02g038610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 24,409.96 Da | 57.34 | 61.64 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 75 | 152 | 9.52353E-11 | - |
| Pfam | PF12906 | RING-variant domain | 110 | 151 | 3.9E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 154 | 2.03E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 162 | 3.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 74 | 152 | 4.2E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 67 | 158 | 17.048429 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59000.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_013612845.1 | PREDICTED: uncharacterized protein LOC106319146 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X7S3M1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036296 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology