Basic Information
Locus ID:
BniB02g037110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 44867777 | 44870121 | - | BniB02g037110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 54,815.69 Da | 47.37 | 86.09 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 205 | 4.9E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.3E-7 | IPR020683 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 321 | 372 | 1.4E-4 | IPR018957 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 220 | 265 | 9.5E-8 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 382 | 5.14E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 273 | 3.25E-52 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 147 | 1.9E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 148 | 283 | 8.1E-26 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 392 | 4.4E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0021 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 372 | 4.5E-6 | IPR001841 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 1.1E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 8.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 249 | 4.5E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 0.0085 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.914011 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 204 | 12.99165 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 11.00669 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 252 | 11.14024 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 373 | 10.527129 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 13.30375 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 139 | 9.595634 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.06336 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 251 | 9.781353 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.956926 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 139 | 9.61777 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 236 | 250 | 4.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 178 | 193 | 4.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_048598903.1 | E3 ubiquitin-protein ligase XBAT32 [Brassica napus] | 0 |
| Q6NLQ8 | E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana OX=3702 GN=XBAT32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V4P3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_036133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology