Basic Information
Locus ID:
BniB02g034150.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 42666449 | 42670173 | + | BniB02g034150.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 84,022.73 Da | 39.09 | 90.64 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 52 | 348 | 3.12601E-177 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 365 | 669 | 1.40582E-177 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 371 | 664 | 4.4E-25 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 82 | 343 | 4.4E-7 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 51 | 348 | 1.67E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 365 | 669 | 5.23E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 365 | 670 | 1.3E-41 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 50 | 349 | 1.4E-33 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 52 | 349 | 44.447056 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 365 | 670 | 46.209118 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_009120058.1 | glycerophosphodiester phosphodiesterase GDPDL4 [Brassica rapa] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V371 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology