Basic Information
Locus ID:
BniB02g033630.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 42296941 | 42298767 | - | BniB02g033630.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 40,135.11 Da | 34.70 | 92.53 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 50 | 211 | 4.29514E-95 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 47 | 213 | 6.9E-36 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 258 | 367 | 3.83E-16 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 47 | 227 | 1.26E-45 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 44 | 220 | 4.9E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 250 | 354 | 9.1E-23 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_013612367.1 | PREDICTED: pyruvate decarboxylase 2 [Brassica oleracea var. oleracea] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9IZM0 | pyruvate decarboxylase OS=Brassica cretica OX=69181 GN=F2Q70_00005039 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology