Basic Information
Locus ID:
BniB02g032930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B2 | 41838619 | 41840131 | + | BniB02g032930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 35,782.06 Da | 45.03 | 75.05 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 220 | 284 | 6.81986E-15 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 220 | 287 | 2.6E-9 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 45 | 127 | 2.1E-13 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 39 | 133 | 3.27E-23 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 220 | 288 | 9.03E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 219 | 292 | 4.5E-16 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 30 | 148 | 7.4E-21 | IPR036431 |
| SMART | SM01014 | ARID_2 | 37 | 127 | 4.1E-20 | - |
| SMART | SM00501 | bright_3 | 41 | 132 | 8.8E-25 | IPR001606 |
| SMART | SM00398 | hmgende2 | 219 | 288 | 1.1E-10 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 220 | 287 | 13.432953 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 40 | 131 | 21.009779 | IPR001606 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55650.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_013591080.1 | PREDICTED: high mobility group B protein 10 [Brassica oleracea var. oleracea] | 0 |
| Q9LG02 | Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMGB11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7V0Z9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_035797 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology